Previous experiments have shown [1,2] that the complex spatiotemporal vortex structures emerging in motile bacterial suspensions are susceptible to weak geometrical constraints. By a combination of continuum theory and experiments, we have shown how artificial obstacles guide the flow profile and reorganize topological defects, which enables the design of bacterial vortex lattices with tunable properties. In more recent studies, we observed the emergence of spatiotemporal chaos in a bacterial suspension confined in a cylindrical well. As the well radius increases, we observed a bifurcation sequence from a steady-state vortex to periodically reversing vortices, four pulsating vortices, and, finally, to spatiotemporal chaos (active turbulence). The results of experiments are rationalized by the analysis of the continuum model for bacterial suspensions based on the complex Swift-Hohenberg equations. Furthermore, the bifurcation sequence is explained by analytical reduction to amplitude equations for the three lowest azimuthal modes. Equations of motion are then reconstructed from experimental data. The results indicate that the vortex reversal precedes the onset of spatiotemporal chaos in confined active systems. [1] D Nishiguchi, IS Aranson, A Snezhko, A Sokolov, Engineering bacterial vortex lattice via direct laser lithography, Nature communications 9 (1), 4486 115 (2018) [2] H Reinken, D Nishiguchi, S Heidenreich, A Sokolov, M Bär, S. H. L. Klapp & I. S. Aranson, Organizing bacterial vortex lattices by periodic obstacle arrays. Commun Phys 3, 76 (2020)